Kmer-db: instant evolutionary distance estimation.
Identifieur interne : 000507 ( Main/Exploration ); précédent : 000506; suivant : 000508Kmer-db: instant evolutionary distance estimation.
Auteurs : Sebastian Deorowicz [Pologne] ; Adam Gudys [Pologne] ; Maciej Dlugosz [Pologne] ; Marek Kokot [Pologne] ; Agnieszka Danek [Pologne]Source :
- Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2019.
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English descriptors
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Abstract
Kmer-db is a new tool for estimating evolutionary relationship on the basis of k-mers extracted from genomes or sequencing reads. Thanks to an efficient data structure and parallel implementation, our software estimates distances between 40 715 pathogens in <7 min (on a modern workstation), 26 times faster than Mash, its main competitor.
DOI: 10.1093/bioinformatics/bty610
PubMed: 29986074
Affiliations:
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Le document en format XML
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